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NGFN R packages for microarray analysis

Name Description
adSplit A package exploring functional annotations to generate biologically motivated splits.
compdiagTools An R package containing tools for analysis and illustration of microarray experiments.
DCOEX An algorithm for finding groups of genes which are differentially coexpressed between two phenotypically distinct types of samples.
JALI A new algorithm for amino acid sequence classification and the detection of remote homologs.
MACAT An R/Bioconductor package for finding significantly differentially expressed chromosome regions.
nem An R/Bioconductor package to reconstruct phenotypic hierarchies from high-dimensional phenotying screens.
OrderedList An R/Bioconductor package to explore the similarity between two lists of ordered genes.
StAM An R/Bioconductor package for decomposing complex phenotypes using biologically structured classification.
TWILIGHT An R/Bioconductor package for two-condition microarray experiments. Includes computation of scores, empirical p-values and local false discovery rates.